Publications

Peer-reviewed publications from the most recent:

  1. Fedriani J.M., Wiegand T., Garrote P.J., Leiva M.J. & Ayllón D. 2023. Seed dispersal effectiveness in fragmented and defaunated landscapes. Ecosphere, e4658.
  2. Baquero R.A., Oficialdegui F.J., Ayllón D. & Nicola G.G. 2023. The challenge of managing threatened invasive species at a continental scale. Conservation Biology, 37 (5), e14165.
  3. Almodóvar A., Nicola G.G., Ayllón D., Leal S., Marchán, D.F. & Elvira B. 2023. A benchmark for Atlantic salmon conservation: genetic diversity and structure in a southern European glacial refuge before the climate changed. Fishes 8 (6), 321.
  4. Elvira B., Nicola G.G., Ayllón D. & Almodóvar A. 2022. Seasonal patterns of microhabitat selection in the Southern Iberian spined-loach Cobitis paludica. Aquatic Sciences 84: 34.
  5. *Ayllón D., *Baquero R.A. & Nicola G.G. 2022. Differential vulnerability to biological invasions: not all protected areas (and not all invaders) are the same. Biodiversity and Conservation 31: 1535-1550. *Equal contribution.
  6. Kane A., Ayllón D., O’Sullivan R.J., McGinnity P. & Reed T.E. 2022. Escalating the conflict? Inter-sex genetic correlations influence adaptation to environmental change in facultatively migratory populations. Evolutionary Applications 15 (5): 773-789.
  7. Baquero R.A., Barbosa A.M., Ayllón D., Guerra C., Sánchez E., Araújo M.B. & Nicola G.G. 2021. Potential distributions of invasive vertebrates in the Iberian Peninsula under projected changes in extreme climate events. Diversity & Distributions 27 (11): 2262-2276.
  8. Railsback S.F., Ayllón D. & Harvey B.C. 2021. InSTREAM 7: Instream flow assessment and management model for stream trout.  River Research and Applications 37 (9): 1294-1302.
  9. *Baquero R.A., *Ayllón D., Oficialdegui F.J. & Nicola G.G. 2021. Tackling biological invasions in Natura 2000 network in the light of the new EU Biodiversity Strategy for 2030. Management of Biological Invasions 12 (4): 776-791. *Equal contribution.
  10. Elvira B., Nicola G.G., Ayllón D. & Almodóvar A. 2021. Determinants of large-scale spatial distribution and seasonal microhabitat selection patterns of the endangered freshwater blenny Salaria fluviatilis in the Ebro River basin, Spain. Aquatic Conservation: Marine and Freshwater Ecosystems 31 (11): 3261-3275.
  11. *Baquero R.A., *Ayllón D. & Nicola G.G. 2021. Are the EU biosecurity legislative frameworks sufficiently effective to prevent biological invasions in the Natura 2000 network? – A case study in Mediterranean Europe. Environmental Science & Policy 120: 21-28. *Equal contribution.
  12. Ayllón D., Nicola G.G., Elvira B. & Almodóvar A. 2021. Climate change will render size-selective harvest of cold-water fish species unsustainable in Mediterranean freshwaters. Journal of Applied Ecology 58 (3): 562-575.
  13. Ayllón D., Railsback S.F., Gallagher C., Augusiak J., Baveco H., Berger U., Charles S., Martin R., Focks A., Galic N., Liu C, van Loon., E.E., Nabe-Nielsen J., Piou C., Polhill J.G., Preuss T.G., Radchuk V., Schmolke A., Stadnicka-Michalak J., Thorbek P. & Grimm V. 2021. Keeping modelling notebooks with TRACE: Good for you and good for environmental research and management support. Environmental Modelling & Software 136, 104932.
  14. Railsback S.F., Harvey B.C. & Ayllón D. 2021. Importance of the daily light cycle in population-habitat relations: a simulation study. Transactions of the American Fisheries Society 150 (1): 130-143.
  15. Fedriani J.M., Calvo G., Delibes M., Ayllón D. & Garrote P. 2020. The overlooked benefits of synzoochory: rodents rescue seeds from aborted fruits. Ecosphere 11 (11), e03298.
  16. Railsback S.F., Harvey B.C. & Ayllón D. 2020. Contingent tradeoff decisions with feedbacks in cyclical environments: testing alternative theories. Behavioral Ecology 31 (5): 1192-1206.
  17. Fedriani J.M., Ayllón D., Wiegand T. & Grimm V. 2020. Intertwined effects of defaunation, increased tree mortality, and density compensation on seed dispersal. Ecography 43 (9): 1352-1363.
  18. Grimm V., Railsback S.F., Vincenot C.E., Berger U., Gallagher C., DeAngelis D.L., Edmonds B., Ge J., Giske J., Groeneveld J., Johnston A.S.A., Milles A., Polhill J.G., Radchuk V., Rohwäder M.S., Stillman R., Thiele J.C. & Ayllón D. 2020. The ODD protocol for describing agent-based and other simulation models: a second update to improve clarity, replication, and structural realism. Journal of Artificial Societies and Social Simulation 23 (2), 7.
  19. Almodóvar A., Nicola G.G., Ayllón D., Trueman C.N., Davidson I., Kennedy R. & Elvira B. 2020. Stable isotopes suggest the location of marine feeding grounds of south European Atlantic salmon in Greenland. ICES Journal of Marine Science 77 (2): 593-603.
  20. Ayllón D., Railsback S.F., Harvey B.C., García Quirós, I., Nicola G.G., Elvira B. & Almodóvar A. 2019. Mechanistic simulations predict that thermal and hydrological effects of climate change on Mediterranean trout cannot be offset by adaptive behaviour, evolution, and increased food production. Science of the Total Environment 693, 133648.
  21. Ayllón D., Nicola G.G., Elvira B. & Almodóvar A. 2019. Optimal harvest regulations under conflicting tradeoffs between conservation and recreational fishery objectives. Fisheries Research 216: 47-58.
  22. Almodóvar A., Ayllón D., Nicola G.G., Jonsson B. & Elvira B. 2019. Climate-driven bio-physical changes in feeding and breeding environments explain the decline of southernmost European Atlantic salmon populations. Canadian Journal of Fisheries and Aquatic Sciences 76: 1581-1595.
  23. Baggio R.A., Araujo S.B.L., Ayllón D. & Boeger W.A. 2018. Dams cause genetic homogenization in populations of fish that present homing behavior: evidence from a demogenetic individual-based model. Ecological Modelling 384: 209-220.
  24. Ayllón D., Railsback S.F., Almodóvar A., Nicola G.G., Vincenzi S., Elvira B. & Grimm V. 2018. Eco-evolutionary responses to recreational fishing under different harvest regulations. Ecology and Evolution 8: 9600-9623.
  25. Liukkonen L., Ayllón D., Kunnasranta M., Niemi M., Nabe-Nielsen J., Grimm V. & Nyman A. 2018. Modelling movements of Saimaa ringed seals using an individual-based approach. Ecological Modelling 368: 321-335.
  26. Ayllón D., Grimm V., Attinger S., Hauhs M., Simmer C., Vereecken H. & Lischeid G. 2018. Cross-disciplinary links in environmental systems science: current state and claimed needs identified in a meta-review of process models. Science of the Total Environment 622-623: 954-973.
  27. Nicola G.G., Elvira B., Jonsson B., Ayllón D. & Almodóvar A. 2018. Local and global climatic drivers of Atlantic salmon decline in southern Europe. Fisheries Research 198: 78-85.
  28. Fedriani J.M., Wiegand T., Ayllón D., Palomares F., Suárez-Esteban A. & Grimm V. 2018. Assisting seed dispersers to restore oldfields: An individual-based model of the interactions among badgers, foxes and Iberian pear trees. Journal of Applied Ecology 55 (2): 600-611.
  29. Dick D.D.C. & Ayllón D. 2017. FloMan-MF: Floodplain Management for the Moor Frog – a simulation model for amphibian conservation in dynamic wetlands. Ecological Modelling 348: 110-124.
  30. Railsback S.F., Ayllón D., Berger U., Grimm V., Lytinen S.L., Sheppard C.J.R. & Thiele J.C. 2017. Improving execution speed of models implemented in NetLogo. Journal of Artificial Societies and Social Simulation 20 (1), 3.
  31. Grimm V., Ayllón D. & Railsback S.F. 2017. Next-generation individual-based models integrate biodiversity and ecosystems: yes we can, and yes we must. Ecosystems 20: 229-236. 20th Anniversary Paper.
  32. Nicola G.G., Ayllón D., Elvira B. & Almodóvar A. 2016. Territorial and foraging behaviour of juvenile Mediterranean trout under variable food abundance and competitor density. Canadian Journal of Fisheries and Aquatic Sciences 73 (6): 990-998.
  33. Ayllón D., Railsback S.F., Vincenzi S., Groeneveld J., Almodóvar A. & Grimm V. 2016. InSTREAM-Gen: modelling eco-evolutionary dynamics of trout populations under anthropogenic environmental change. Ecological Modelling 326: 36-53.
  34. Chudzińska M., Ayllón D., Nabe-Nielsen J. & Madsen J. 2016. Discriminating between possible foraging decisions using pattern-oriented modelling: the case of pink-footed geese in Mid-Norway during their spring migration. Ecological Modelling 320: 299-315.
  35. Ayllón D., Nicola G.G., Parra I., Elvira B & Almodóvar A. 2014. Spatio-temporal habitat selection shifts in brown trout populations under contrasting natural flow regimes. Ecohydrology 7 (2): 569-579.
  36. Ayllón D., Nicola G.G., Elvira B., Parra I. & Almodóvar A. 2013. Thermal Carrying Capacity for a Thermally-Sensitive Species at the Warmest Edge of Its Range. PLoS ONE 8 (11), e81354.
  37. Ayllón D., Nicola G.G., Parra I., Elvira B & Almodóvar A. 2013. Intercohort density dependence drives brown trout habitat selection. Acta Oecologica 46: 1-9.
  38. Ayllón D., Almodóvar A., Nicola G.G. & Elvira B. 2012. The influence of variable habitat suitability criteria on PHABSIM habitat index results. River Research and Applications 28 (8): 1179-1188.
  39. Ayllón D., Almodóvar A., Nicola G.G., Parra I. & Elvira B. 2012. Modelling carrying capacity dynamics for the conservation and management of territorial salmonids. Fisheries Research 134-136: 95-103.
  40. Parra I., Almodóvar A., Ayllón D., Nicola G.G. & Elvira B. 2012. Unravelling the effects of water temperature and habitat competition on the spatial variation of brown trout body size. Canadian Journal of Fisheries and Aquatic Sciences 69 (5): 821-832.
  41. Ayllón D., Almodóvar A., Nicola G.G., Parra I. & Elvira B. 2012. A new biological indicator to assess the ecological status of Mediterranean trout type streams. Ecological Indicators 20: 295-303.
  42. Almodóvar A., Nicola G.G., Ayllón D. & Elvira B. 2012. Global warming threatens the persistence of Mediterranean brown trout. Global Change Biology 18 (5): 1549-1560.
  43. Parra I., Almodóvar A., Ayllón D., Nicola G.G. & Elvira B. 2011. Ontogenetic variation in density-dependent growth of brown trout through habitat competition. Freshwater Biology 56 (3): 530-540.
  44. Ayllón D., Almodóvar A., Nicola G.G. & Elvira B. 2010. Modelling brown trout spatial requirements through physical habitat simulations. River Research and Applications 26 (9): 1090-1102.
  45. Ayllón D., Almodóvar A., Nicola G.G. & Elvira B. 2010. Ontogenetic and spatial variations in brown trout habitat selection. Ecology of Freshwater Fish 19 (3): 420-432.
  46. Ayllón D., Almodóvar A., Nicola G.G. & Elvira B. 2009. Interactive effects of cover and hydraulics on brown trout habitat selection patterns. River Research and Applications 25 (8): 1051-1065.

Other scientific publications and electronic books: